The detailed information of tRNA gene sequence


Sequence ID>SRA1001234
Genome IDSRR001056.20911
Search identical group
Phylum/ClassSolar Salterns, viral fraction from medium salinity saltern in San Diego, CA (SRP000146)
Species
Start position on genome 15
End posion on genome 89
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tagtcttttg
tRNA gene sequence 
TCTCGGTTGGTGTAGTTCGGCCAATCATGAAAGCCTTTCGAGCTTTCGACACGGGTTCAA
ATCCCGTACCGAGCAttt
Downstream region at tRNA end position 
tatatacata
Secondary structure (Cloverleaf model)
>SRA1001234	Glu	TTC
                   g      Attt tatatacata
                     T   C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C
                     T - A          T A
                    T     T G C C C     A
    T T G A        G      | | | | |     A
  C         T G T G       A C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    A - T
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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