The detailed information of tRNA gene sequence


Sequence ID>SRA1001235
Genome IDSRR001056.29761
Search identical group
Phylum/ClassSolar Salterns, viral fraction from medium salinity saltern in San Diego, CA (SRP000146)
Species
Start position on genome 21
End posion on genome 97
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
aagtattgat
tRNA gene sequence 
GTCCCCATCGTCTAGGCGGCCAAGGACTCTGGTTTCTCAGATCAGCAACACAGGTTCGAA
TCCTGTTGGGGACGCCA
Downstream region at tRNA end position 
agannnnnnn
Secondary structure (Cloverleaf model)
>SRA1001235	Glu	CTC
                   t      GCCA agannnnnnn
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T G T C C     A
    C G G A        C      | | | | |     G
  G         T C T G       A C A G G     C
  G         + | | |                 T T
  C         G G A C
    C A A          T     CAAC
                    C - G
                    T - A
                    G - C
                    G + T
                    T - A
                  T       G
                  T       A
                    C T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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