The detailed information of tRNA gene sequence


Sequence ID>SRA1001236
Genome IDSRR001056.30272
Search identical group
Phylum/ClassSolar Salterns, viral fraction from medium salinity saltern in San Diego, CA (SRP000146)
Species
Start position on genome 15
End posion on genome 109
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
taataaatat
tRNA gene sequence 
GGATAGGTGGCAGAGTGGCTTATTGCGAGAATTTGCTAAATTCTTGAGGTCGTTAAAAGC
GGCCTCCGAGGGTTCAAATCCCTCTCTATCCGCCA
Downstream region at tRNA end position 
ttttgnnnnn
Secondary structure (Cloverleaf model)
>SRA1001236	Ser	GCT
                   t      GCCA ttttgnnnnn
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C
                     G + T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     A
    G       G A C G       G A G G G     C
    G       + | | |                 T T
    C       T T G C
      T T A        G     TGAGGTCGTTAAAAGCGGCCTCC
                    A - T
                    G - C
                    A - T
                    A - T
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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