The detailed information of tRNA gene sequence


Sequence ID>SRA1001239
Genome IDSRR001057.3917
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Species
Start position on genome 96
End posion on genome 22
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
nnnnnnnngc
tRNA gene sequence 
GGGCCTATAGCTCAGGTGGTTAGAGCGCTTCACTGATAATGAAGAGGTCGGAGGTTCAAG
TCCTCCTAGGCCAACgg
Downstream region at tRNA end position 
tgagttgtcg
Secondary structure (Cloverleaf model)
>SRA1001239	Ile	GAT
                   c      ACgg tgagttgtcg
                     G   A
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     A - T          T G
                    T     C C T C C     A
      G G A        A      | | | | |     A
    T       C T C G       G G A G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    A - T
                  C       A
                  T       A
                    G A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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