The detailed information of tRNA gene sequence


Sequence ID>SRA1001257
Genome IDSRR001060.8573
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
Species
Start position on genome 116
End posion on genome 31
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnnnnnnnC
tRNA gene sequence 
GGTGGGATGGCGGAGTGGACCAACGCGCCTGCCTTGAAAGCAGGTGGCCGAGAGGCCTCC
TGGGTTCGAATCCCAGTCCCACCGGtg
Downstream region at tRNA end position 
cgggcgtgaa
Secondary structure (Cloverleaf model)
>SRA1001257	Ser	TGA
                   C      GGtg cgggcgtgaa
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G A C C C     A
      T G A        G      | | | | |     G
    G       G G C G       C T G G G     C
    G         | | |                 T T
    A       A C G C
      C C A        G     TGGCCGAGAGGCCTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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