The detailed information of tRNA gene sequence


Sequence ID>SRA1001261
Genome IDSRR001060.13510
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
Species
Start position on genome 87
End posion on genome 13
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
ctgcggtacG
tRNA gene sequence 
GCCGGTGTAGCTCAGCTGGCAGAGCGATTCCTTCGTAAGGAATAGGTCGGGGGTTCAAAT
CCCTCCACCGGCTTgg
Downstream region at tRNA end position 
cgacgaatcc
Secondary structure (Cloverleaf model)
>SRA1001261	Thr	CGT
                   G      TTgg cgacgaatcc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | + | | |     A
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGTC
                    A - T
                    T - A
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    C G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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