The detailed information of tRNA gene sequence


Sequence ID>SRA1001380
Genome IDSRR001064.55135
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
Species
Start position on genome 121
End posion on genome 45
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
nnnnnntttt
tRNA gene sequence 
GGGGGATTAGCTCATTTGGCTAGAGCGCTACGCTGGCAGCGTAGAGGCGACCGGTTCGAA
TCCGGTATTCTCCACTA
Downstream region at tRNA end position 
aatttacttt
Secondary structure (Cloverleaf model)
>SRA1001380	Ala	GGC
                   t      ACTA aatttacttt
                     G - C
                     G - C
                     G + T
                     G - C
                     G + T
                     A - T
                     T - A          T A
                    T     T G G C C     A
      T T A        A      | | | | |     G
    T       C T C G       A C C G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        G     AGGCG
                    C - G
                    T - A
                    A - T
                    C - G
                    G - C
                  C       G
                  T       A
                    G G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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