The detailed information of tRNA gene sequence


Sequence ID>SRA1001391
Genome IDSRR001064.113463
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
Species
Start position on genome 120
End posion on genome 34
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnnnnnccc
tRNA gene sequence 
GGAGAGATGGCAGAGCGGTCGAATGCGGCGGTCTTGAAAACCGTTGACTGTCAAAAGGTC
CGGGGGTTCGAATCCCTCTCTCTCCGCtg
Downstream region at tRNA end position 
aaattagagc
Secondary structure (Cloverleaf model)
>SRA1001391	Ser	TGA
                   c      GCtg aaattagagc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      C G A        G      | + | | |     G
    G       G A C G       G G G G G     C
    G         | | |                 T T
    T       A T G C
      C G A        G     TGACTGTCAAAAGGTCC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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