The detailed information of tRNA gene sequence


Sequence ID>SRA1001433
Genome IDSRR001064.288398
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
Species
Start position on genome 24
End posion on genome 112
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cgcttctttt
tRNA gene sequence 
GGAGAGATGTCCGAGTGGTTTAAGGAGCACGCCTGGAAAGTGTGTATACCCCTAAAGGGT
ATCGAGGGTTCGAATCCCTCTTTCTCCGCat
Downstream region at tRNA end position 
cgtattttan
Secondary structure (Cloverleaf model)
>SRA1001433	Ser	GGA
                   t      GCat cgtattttan
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G + T
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G A G G G     C
    G         | | |                 T T
    T       A G G A
      T T A        G     TATACCCCTAAAGGGTATC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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