The detailed information of tRNA gene sequence


Sequence ID>SRA1001440
Genome IDSRR001064.330301
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
Species
Start position on genome 120
End posion on genome 49
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
nnnctttttt
tRNA gene sequence 
ACGGGCATAGTTCAATGGTAGAATAGCGGTCTCCAAAACCGTTGATACGGGTTCGAATCC
TGTTGCCCGTGCtt
Downstream region at tRNA end position 
cttttcgcga
Secondary structure (Cloverleaf model)
>SRA1001440	Trp	CCA
                   t      GCtt cttttcgcga
                     A - T
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T A
                    T     T G T C C     A
        A A        A      | | + | |     G
      T     C T T G       A C G G G     C
      G     | | | +                 T T
      G     G A A T
        T A        A     TGAT
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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