The detailed information of tRNA gene sequence


Sequence ID>SRA1001461
Genome IDSRR001065.21347
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000153)
Species
Start position on genome 100
End posion on genome 11
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnccacgcaa
tRNA gene sequence 
GGAGGTTTGGGTGAGTGGTTTAAACCAGCAGTCTTGAAAACTGCCGACGGGGTGACCCGT
CCGTGAGTTCGAATCTCACAGCCTCCGCCA
Downstream region at tRNA end position 
ggacatgatg
Secondary structure (Cloverleaf model)
>SRA1001461	Ser	TGA
                   a      GCCA ggacatgatg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T + G
                     T - A          T A
                    T     C A C T C     A
      T G A        G      | | | | |     G
    G       G T G G       G T G A G     C
    G         | | |                 T T
    T       A A C C
      T T A        A     CGACGGGGTGACCCGTCC
                    G - C
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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