The detailed information of tRNA gene sequence


Sequence ID>SRA1001469
Genome IDSRR001065.42115
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000153)
Species
Start position on genome 105
End posion on genome 17
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cacctatcgT
tRNA gene sequence 
GGAGAGGTGGTCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGAGGTCGCAAGGTCT
CCGTGGGTTCGAATCCCACCCTCTCCGTaa
Downstream region at tRNA end position 
ccatggtaat
Secondary structure (Cloverleaf model)
>SRA1001469	Ser	TGA
                   T      GTaa ccatggtaat
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C T G       G T G G G     C
    G         | + |                 T T
    T       A G G C
      T T A        A     CGAGGTCGCAAGGTCTCC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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