The detailed information of tRNA gene sequence


Sequence ID>SRA1001471
Genome IDSRR001065.44226
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000153)
Species
Start position on genome 12
End posion on genome 103
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ggcttttcat
tRNA gene sequence 
GGAGAGGTGTCCGAGCTGGCCGAAGGAGCACGATTGGAAATCGTGTAGGCGTCACAAGCG
TCTCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001471	Ser	GGA
                   t      GCCA nnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C T C C C     A
    T C G A        G      | | | | |     G
  G         G C C T       G A G G G     C
  G           | | |                 T T
  C         A G G A
    C G A          G     TAGGCGTCACAAGCGTCTC
                    C - G
                    A - T
                    C - G
                    G - C
                    A - T
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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