The detailed information of tRNA gene sequence


Sequence ID>SRA1001475
Genome IDSRR001065.51675
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000153)
Species
Start position on genome 4
End posion on genome 78
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
nnnnnnncgt
tRNA gene sequence 
GGAAGGTTAGCTCAGTGGTAGAGCACTGCATTCACACTGCAGGGGTCGCAAGTTCAAACC
TTGCACTTTCCACCA
Downstream region at tRNA end position 
aattacagaa
Secondary structure (Cloverleaf model)
>SRA1001475	Val	CAC
                   t      ACCA aattacagaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G + T
                     G - C
                     T - A          C A
                    T     C G T T C     A
        G A        A      | | | | |     A
      T     C T C G       G C A A G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     GGGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    A - T
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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