The detailed information of tRNA gene sequence


Sequence ID>SRA1001482
Genome IDSRR001066.25149
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154)
Species
Start position on genome 12
End posion on genome 103
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tatatatctt
tRNA gene sequence 
GGAGAGATACCCAAGTGGCTATAAGGGGACCCTCTGCTAAGGGGTTAGACTGCGTAAGTG
GTGCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
gtttccaaan
Secondary structure (Cloverleaf model)
>SRA1001482	Ser	GCT
                   t      GCCA gtttccaaan
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
    G T G A        A      | | | | |     G
  G         A C C C       G A G G G     C
  C           | | |                 T T
  T         A G G G
    A T A          G     TAGACTGCGTAAGTGGTGC
                    A - T
                    C - G
                    C - G
                    C - G
                    T + G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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