The detailed information of tRNA gene sequence


Sequence ID>SRA1001483
Genome IDSRR001066.26584
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154)
Species
Start position on genome 108
End posion on genome 34
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGAAGGTTAGCTCAGTGGTAGAGCACTGCATTCACACTGCAGGGGTCGCAAGTTCAAACC
TTGCACTTTCCACCA
Downstream region at tRNA end position 
aattcagaaa
Secondary structure (Cloverleaf model)
>SRA1001483	Val	CAC
                   c      ACCA aattcagaaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G + T
                     G - C
                     T - A          C A
                    T     C G T T C     A
        G A        A      | | | | |     A
      T     C T C G       G C A A G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     GGGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    A - T
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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