The detailed information of tRNA gene sequence


Sequence ID>SRA1001484
Genome IDSRR001066.29465
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154)
Species
Start position on genome 95
End posion on genome 20
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
nnnnnnttat
tRNA gene sequence 
GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATC
CCGCTTGGCTCCACCA
Downstream region at tRNA end position 
aaaccacatt
Secondary structure (Cloverleaf model)
>SRA1001484	Ala	TGC
                   t      ACCA aaaccacatt
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     A - T          C T
                    T     T C G C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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