The detailed information of tRNA gene sequence


Sequence ID>SRA1001525
Genome IDSRR001068.29962
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156)
Species
Start position on genome 17
End posion on genome 90
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tgtcttacat
tRNA gene sequence 
GAGTCATTAGCTCAGTTGGTAGAGCACCTGACTTTTAATCAGGGTGTCGTAGGTTCGAAT
CCTACATGACTCACtt
Downstream region at tRNA end position 
tgcttannnn
Secondary structure (Cloverleaf model)
>SRA1001525	Lys	TTT
                   t      ACtt tgcttannnn
                     G - C
                     A - T
                     G - C
                     T - A
                     C - G
                     A - T
                     T - A          T A
                    T     C A T C C     A
      T G A        A      | | | | |     G
    T       C T C G       G T A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GTGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T T T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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