The detailed information of tRNA gene sequence


Sequence ID>SRA1001530
Genome IDSRR001068.54425
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156)
Species
Start position on genome 85
End posion on genome 9
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
ggatccctat
tRNA gene sequence 
GCGGAAGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATCC
CCGTCTTCCGTCTACCAtt
Downstream region at tRNA end position 
ttattannnn
Secondary structure (Cloverleaf model)
>SRA1001530	Gly	GCC
                   t      CAtt ttattannnn
                     G - C
                     C   A
                     G + T
                     G - C
                     A - T
                     A   G
                     G - C          G C
                    T     C T T C T     C
        G A        G      |       +     C
      C     C T C G       G T T C G     C
      G     | | | |                 A T
      G     G A G C
        T A        A     GGGTCGCGG
                    T - A
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G C C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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