The detailed information of tRNA gene sequence


Sequence ID>SRA1001533
Genome IDSRR001068.76179
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156)
Species
Start position on genome 97
End posion on genome 22
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
nncaacaacg
tRNA gene sequence 
GTGGCTGTAGCTCAGTTGGTAGAGTCCCAGATTGTGATTCTGGTTGTCGTGGGTTCGAAT
CCCATCAGTCACCCCA
Downstream region at tRNA end position 
agtttcaaga
Secondary structure (Cloverleaf model)
>SRA1001533	His	GTG
                   g      CCCA agtttcaaga
                     G - C
                     T - A
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C          T A
                    T     T A C C C     A
      T G A        A      + | | | |     G
    T       C T C G       G T G G G     C
    G       | | | +                 T T
    G       G A G T
      T A          C     TTGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  T       T
                  T       A
                    G T G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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