The detailed information of tRNA gene sequence


Sequence ID>SRA1001534
Genome IDSRR001068.77862
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156)
Species
Start position on genome 82
End posion on genome 6
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
tgatccaagc
tRNA gene sequence 
GGGTCTGTAGCTCAGCTGGTTAGAGCACCGTGTTGATAACGCGGGGGTCGTTGGTTCGAG
CCCAACCAGACCCACCA
Downstream region at tRNA end position 
aggttnnnnn
Secondary structure (Cloverleaf model)
>SRA1001534	Ile	GAT
                   c      ACCA aggttnnnnn
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     G - C          C G
                    T     C A A C C     A
      C G A        A      | | | | |     G
    T       C T C G       G T T G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        A     GGGTC
                    C - G
                    C - G
                    G - C
                    T + G
                    G - C
                  T       A
                  T       A
                    G A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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