The detailed information of tRNA gene sequence


Sequence ID>SRA1001535
Genome IDSRR001068.80884
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156)
Species
Start position on genome 19
End posion on genome 107
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
gatccatccg
tRNA gene sequence 
GCGAGGGTGGCGAAATTGGTAGACGCACCAGGTTTAGGTCCTGACGCCCTAGCAATGGTG
TAGGGGTTCGAGTCCCCTCCCTCGCACCA
Downstream region at tRNA end position 
aaaatccctt
Secondary structure (Cloverleaf model)
>SRA1001535	Leu	TAG
                   g      ACCA aaaatccctt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T G
                    T     T C C C C     A
      T A A        G      | | | | |     G
    T       A G C G       A G G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     CGCCCTAGCAATGGTGT
                    C   A
                    C - G
                    A - T
                    G - C
                    G - C
                  T       T
                  T       G
                    T A G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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