The detailed information of tRNA gene sequence


Sequence ID>SRA1001544
Genome IDSRR001069.36260
Search identical group
Phylum/ClassTilapia Farm, viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish showed no sign of disease) (SRP000157)
Species
Start position on genome 27
End posion on genome 106
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tttttttatT
tRNA gene sequence 
TGGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGTTGCAGGTTCAA
GTCCTGTTTTTCCAACCC
Downstream region at tRNA end position 
Aaatatgaga
Secondary structure (Cloverleaf model)
>SRA1001544	Pro	TGG
                   T      ACCC Aaatatgaga
                     T - A
                     G - C
                     G - C
                     G + T
                     G + T
                     A - T
                     A - T          T G
                    A     T G T C C     A
    T A A T        T      + | | | |     A
  T         T C G A       G C A G G     C
  T         +                       T T
  G         G A G C
    G T A          A     GGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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