The detailed information of tRNA gene sequence


Sequence ID>SRA1001557
Genome IDSRR001071.16357
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 2
End posion on genome 77
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGGGCGTTAGCTCAGCTGGTAGAGCAGCGGACTCTTAATCCGTAGGTCCACAGTTCGAAT
CTGTGACGCCCCACCA
Downstream region at tRNA end position 
aaatttcaaa
Secondary structure (Cloverleaf model)
>SRA1001557	Lys	CTT
                   c      ACCA aaatttcaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A          T A
                    T     G T G T C     A
      C G A        A      | | | | |     G
    T       C T C G       C A C A G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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