The detailed information of tRNA gene sequence


Sequence ID>SRA1001560
Genome IDSRR001071.30658
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 89
End posion on genome 18
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
cctgagccgg
tRNA gene sequence 
TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC
CCCGACGGGGAGttt
Downstream region at tRNA end position 
ccttttagat
Secondary structure (Cloverleaf model)
>SRA1001560	Asp	GTC
                   g      Gttt ccttttagat
                     T - A
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     T - A          T T
                    T     G C C C C     A
      T G A        A      | | | | |     G
    G       T A T G       C G G G G     C
    G       + | | +                 T T
    A       G T A T
      C A          C     AGAC
                    T - A
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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