The detailed information of tRNA gene sequence


Sequence ID>SRA1001565
Genome IDSRR001071.50624
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 109
End posion on genome 34
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
nnnnnncgtt
tRNA gene sequence 
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAATTC
CCGGACGAGCCCTCC
Downstream region at tRNA end position 
Accgtaacag
Secondary structure (Cloverleaf model)
>SRA1001565	Pro	CGG
                   t      CTCC Accgtaacag
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     T - A          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      G     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    C G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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