The detailed information of tRNA gene sequence


Sequence ID>SRA1001566
Genome IDSRR001071.51253
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 101
End posion on genome 20
Amino Acid Leu
Anticodon AAG
Upstream region at tRNA start position 
ncctttttca
tRNA gene sequence 
GGTAGTGTGGCCGAGTGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTCAGGAGGCGTG
GGTTCAAATCCCACCACTGCCAttt
Downstream region at tRNA end position 
gacaaggtta
Secondary structure (Cloverleaf model)
>SRA1001566	Leu	AAG
                   a      Attt gacaaggtta
                     G - C
                     G - C
                     T + G
                     A - T
                     G - C
                     T - A
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TCTCTCAGGAGGC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  T       C
                  T       G
                    A A G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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