The detailed information of tRNA gene sequence


Sequence ID>SRA1001567
Genome IDSRR001071.51276
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 3
End posion on genome 77
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
nnnnnnnngt
tRNA gene sequence 
GTCTCTGTGGCGCAATCGGCCAGCGCGCTCGGCTGTTAACCGAGAGGATGGGTGGTTCGA
GCCCACCCAGGGCGTtac
Downstream region at tRNA end position 
aaaaaccttc
Secondary structure (Cloverleaf model)
>SRA1001567	Asn	GTT
                   t      Ttac aaaaaccttc
                     G   G
                     T   C
                     C - G
                     T + G
                     C - G
                     T - A
                     G - C          C G
                    T     C C A C C     A
      T A A        G      | | | | |     G
    C       C G C G       G G T G G     C
    G       | | | |                 T T
    G       G C G C
      C C A        G     AGGATG
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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