The detailed information of tRNA gene sequence


Sequence ID>SRA1001579
Genome IDSRR001072.33412
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 92
End posion on genome 8
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
attgcagaag
tRNA gene sequence 
GCCCACGTGGCGGAATTGGTAGACGCGCATGGTTCAGGTCCATGTGCCGCGAGGTGTGGG
GGTTCGAGTCCCTCCGTGGGCACCA
Downstream region at tRNA end position 
gacataannn
Secondary structure (Cloverleaf model)
>SRA1001579	Leu	CAG
                   g      ACCA gacataannn
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     C - G
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | + | | |     G
    T       G G C G       G G G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        G     TGCCGCGAGGTGT
                    C - G
                    A - T
                    T - A
                    G - C
                    G - C
                  T       T
                  T       G
                    C A G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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