The detailed information of tRNA gene sequence


Sequence ID>SRA1001580
Genome IDSRR001072.35365
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 76
End posion on genome 1
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
gaacgaatga
tRNA gene sequence 
GGGTGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAGC
CCGTCATCACCCACCA
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001580	Val	TAC
                   a      ACCA nnnnnnnnnn
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     T - A          C G
                    T     C T G C C     A
      T G A        A      | + | | |     G
    T       C T C G       G G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GGGTC
                    T + G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    T A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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