The detailed information of tRNA gene sequence


Sequence ID>SRA1001581
Genome IDSRR001072.40588
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 112
End posion on genome 36
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
nnnnttgcgt
tRNA gene sequence 
AGGGGAATCGCCAAGCTGGTTAAGGCACCGGATTTTGATTCCGGCATTCCAAGGTTCGAA
TCCTTGTTCCCCTGCCA
Downstream region at tRNA end position 
tttaattcgg
Secondary structure (Cloverleaf model)
>SRA1001581	Gln	TTG
                   t      GCCA tttaattcgg
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T          T A
                    T     G T T C C     A
      C G A        C      | | | | |     G
    T       A C C G       C A A G G     C
    G         | | |                 T T
    G       A G G C
      T T A        A     CATTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  T       T
                  T       A
                    T T G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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