The detailed information of tRNA gene sequence


Sequence ID>SRA1001582
Genome IDSRR001072.43969
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 89
End posion on genome 14
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tgtccgtctt
tRNA gene sequence 
GGCCTGGTAGCTCAGTTGGTAGAGCAGAGGATTGAAAATCCTTGTGTCGGTGGTTCGATT
CCGCCCCGGGCCACCA
Downstream region at tRNA end position 
agttacaaga
Secondary structure (Cloverleaf model)
>SRA1001582	Phe	GAA
                   t      ACCA agttacaaga
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C
                     G - C          T T
                    T     C C G C C     A
      T G A        A      | | + | |     G
    T       C T C G       G G T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GTGTC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G A A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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