The detailed information of tRNA gene sequence


Sequence ID>SRA1001585
Genome IDSRR001072.48296
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 3
End posion on genome 79
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnnnnnnga
tRNA gene sequence 
CGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAA
TCCTGCCCCCGCAACCA
Downstream region at tRNA end position 
aatgcactaa
Secondary structure (Cloverleaf model)
>SRA1001585	Met	CAT
                   a      ACCA aatgcactaa
                     C   A
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G T C C     A
      T G A        G      | + | | |     A
    C       C G A G       G T A G G     C
    T       | | | |                 T T
    G       G C T C
      G C A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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