The detailed information of tRNA gene sequence


Sequence ID>SRA1001588
Genome IDSRR001072.61917
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 80
End posion on genome 4
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aagacaatat
tRNA gene sequence 
GGCGGCGTAGCTCAGCTGGCTAGAGCGTACGGTTCATACCCGTAAGGTCGGGGGTTCGAG
CCCCTCTGCCGCTACTA
Downstream region at tRNA end position 
gatnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001588	Met	CAT
                   t      ACTA gatnnnnnnn
                     G + T
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G + T          C G
                    T     C T C C C     A
      C G A        A      | + | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        G     AGGTC
                    T - A
                    A - T
                    C - G
                    G - C
                    G - C
                  T       C
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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