The detailed information of tRNA gene sequence


Sequence ID>SRA1001591
Genome IDSRR001072.65213
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 76
End posion on genome 1
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ctttttttat
tRNA gene sequence 
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGTTGCAGGTTCAAG
TCCTGTTTTTCCAACCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001591	Pro	TGG
                   t      ACCn nnnnnnnnnn
                     T - A
                     G - C
                     G - C
                     G + T
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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