The detailed information of tRNA gene sequence


Sequence ID>SRA1001592
Genome IDSRR001072.67487
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 3
End posion on genome 76
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
nnnnnnnntc
tRNA gene sequence 
GCGGGTGTAGCTCAATGGTAGAGCAGAAGCTTCCCAAGCTTAAGACGAGGGTTCGATCCC
CTTCACCCGCTCCA
Downstream region at tRNA end position 
gatcgcttcc
Secondary structure (Cloverleaf model)
>SRA1001592	Gly	CCC
                   c      TCCA gatcgcttcc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          C T
                    T     T T C C C     A
        A A        A      + | | | |     G
      T     C T C G       G A G G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     AGAC
                    G   A
                    A - T
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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