The detailed information of tRNA gene sequence


Sequence ID>SRA1001618
Genome IDSRR001074.30109
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
Species
Start position on genome 103
End posion on genome 27
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
nnnnnntcat
tRNA gene sequence 
GCCGCCTTAGCTCAGTTGGTTAGAGCGCTAGATTGTGGATCTAGAGGTCCCCGGTTCAAA
TCTGGGAGGCGGTACCA
Downstream region at tRNA end position 
tttcaaaccc
Secondary structure (Cloverleaf model)
>SRA1001618	His	GTG
                   t      ACCA tttcaaaccc
                     G + T
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G T C     A
      T G A        A      | | | + |     A
    T       C T C G       C C C G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    T - A
                    A - T
                    G - C
                    A - T
                  T       A
                  T       G
                    G T G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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