The detailed information of tRNA gene sequence


Sequence ID>SRA1001622
Genome IDSRR001075.1559
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000163)
Species
Start position on genome 111
End posion on genome 37
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
nnaaaaatat
tRNA gene sequence 
GCGGCGCTAGTTCAGTGGTCAGAACACCCGACTTTCTCTCGGGTAACAAGGGTTCGATTC
CCTTGCGCCGTGCCA
Downstream region at tRNA end position 
ccctttcaaa
Secondary structure (Cloverleaf model)
>SRA1001622	Glu	TTC
                   t      GCCA ccctttcaaa
                     G + T
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G          T T
                    T     T T C C C     A
      T G A        A      | | | | |     G
    G       C T T G       A A G G G     C
    G       | | | |                 T T
    T       G A A C
      C A          A     TAAC
                    C - G
                    C - G
                    C - G
                    G - C
                    A - T
                  C       C
                  T       T
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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