The detailed information of tRNA gene sequence


Sequence ID>SRA1001641
Genome IDSRR001076.14187
Search identical group
Phylum/ClassTilapia Farm, viral fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000164)
Species
Start position on genome 21
End posion on genome 93
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atggaagaat
tRNA gene sequence 
GATGACATGGCTGAATGGATTTAGGCTGTCGGCTGCAACCCGACCTATACAGGTTCGAAT
CCTGTTGTCATCTann
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001641	Cys	GCA
                   t      Tann nnnnnnnnnn
                     G - C
                     A - T
                     T - A
                     G - C
                     A - T
                     C - G
                     A - T          T A
                    T     T G T C C     A
      T A A        G      | | | | |     G
    G       G T C G       A C A G G     C
    G         + | |                 T T
    A       A G G C
      T T T        T     CTAT
                    G - C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       C
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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