The detailed information of tRNA gene sequence


Sequence ID>SRA1001653
Genome IDSRR001076.52284
Search identical group
Phylum/ClassTilapia Farm, viral fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000164)
Species
Start position on genome 2
End posion on genome 73
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
nnnnnnnnna
tRNA gene sequence 
GCGTGTATGGTGTAGCGGTTAGCATTTTGGTCTCCAAAACCAAAGACATAAGTTCAAATC
TTATTATGCGTGatt
Downstream region at tRNA end position 
aaaaaaagaa
Secondary structure (Cloverleaf model)
>SRA1001653	Trp	CCA
                   a      Gatt aaaaaaagaa
                     G + T
                     C - G
                     G - C
                     T + G
                     G + T
                     T - A
                     A - T          T A
                    T     T A T T C     A
      C G A        G      | | | | |     A
    G       T G T G       A T A A G     C
    G       + | | +                 T T
    T       G C A T
      T A          T     AGAC
                    T - A
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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