The detailed information of tRNA gene sequence


Sequence ID>SRA1001663
Genome IDSRR001077.14515
Search identical group
Phylum/ClassCoral Stressors, viral fraction from whole Porites compressa tissue extracts; Hawai'i Marine Laboratory Refuge Point Reef Corals (SRP000165)
Species
Start position on genome 76
End posion on genome 5
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
tttatcttcc
tRNA gene sequence 
GCCTGATTAGTACAATGGTCAGTACGACTATCTTGTAAATAGTAAATTTGGGTTCGATTC
CTTGATTGGGCAata
Downstream region at tRNA end position 
gnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001663	Thr	TGT
                   c      Aata gnnnnnnnnn
                     G - C
                     C - G
                     C - G
                     T + G
                     G + T
                     A - T
                     T - A          T T
                    T     G T T C C     A
      T A A        A      +   + | |     G
    G       C A T G       T T G G G     C
    G       | | | |                 T T
    T       G T A C
      C A          G     AAAT
                    A - T
                    C - G
                    T - A
                    A - T
                    T - A
                  C       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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