The detailed information of tRNA gene sequence


Sequence ID>SRA1001664
Genome IDSRR001077.21801
Search identical group
Phylum/ClassCoral Stressors, viral fraction from whole Porites compressa tissue extracts; Hawai'i Marine Laboratory Refuge Point Reef Corals (SRP000165)
Species
Start position on genome 24
End posion on genome 96
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
gtcgatgtct
tRNA gene sequence 
TGTGGCGTAGTTCAATAGGCAGAACACCGGATTCTGAATTCGGCGGTTGACAGTTCGACT
CTGTCCGCCACATttg
Downstream region at tRNA end position 
agagnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001664	Gln	CTG
                   t      Tttg agagnnnnnn
                     T - A
                     G - C
                     T - A
                     G - C
                     G - C
                     C - G
                     G - C          T C
                    T     C T G T C     A
      T A A        A      | | | | |     G
    A       C T T G       G A C A G     C
    G       | | | |                 T T
    G       G A A C
      C A          A     CGGTT
                    C - G
                    C - G
                    G - C
                    G + T
                    A - T
                  T       A
                  T       A
                    C T G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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