The detailed information of tRNA gene sequence


Sequence ID>SRA1001685
Genome IDSRR001081.37633
Search identical group
Phylum/ClassCoral Stressors, viral fraction from whole Porites compressa tissue extracts; a reduced pH stressor experiment (SRP000169)
Species
Start position on genome 81
End posion on genome 5
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agcgagccga
tRNA gene sequence 
CGCGGGGTGGAGCAGTTCGGTAGCTCGCCGGGCTCATAACCCGGAGGTCACAGGTTCAAA
TCCTGTCCCCGCTACCA
Downstream region at tRNA end position 
gttcnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001685	Met	CAT
                   a      ACCA gttcnnnnnn
                     C   T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G T C C     A
      T G A        G      | | | | |     A
    T       C G A G       A C A G G     C
    C       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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