The detailed information of tRNA gene sequence


Sequence ID>SRA1001687
Genome IDSRR001082.6971
Search identical group
Phylum/ClassCoral Stressors, viral fraction from whole Porites compressa tissue extracts; a nutrient stressor experiment (SRP000170)
Species
Start position on genome 41
End posion on genome 117
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gaccacaaac
tRNA gene sequence 
GGGCTTGTAGCTCAGTCGGTTAGAGCGAACCGCTCATAACGGTTTGGTCGCTGGTTCGAG
TCCAGCCGAGCCCACCA
Downstream region at tRNA end position 
cttggnnnnn
Secondary structure (Cloverleaf model)
>SRA1001687	Met	CAT
                   c      ACCA cttggnnnnn
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     T + G
                     G - C          T G
                    T     C G A C C     A
      T G A        A      | | | | |     G
    C       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     TGGTC
                    A - T
                    A - T
                    C - G
                    C - G
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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