The detailed information of tRNA gene sequence


Sequence ID>SRA1001778
Genome IDSRR001308.49435
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 96
End posion on genome 22
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
ctcgcttgac
tRNA gene sequence 
GGGCGGTTAGCTCAGCGGTAGAGCATTGCTTTCACACGGCAAGGGTCACTGGTTCGATCC
CAGTACCGCCCACCA
Downstream region at tRNA end position 
tacaagcaca
Secondary structure (Cloverleaf model)
>SRA1001778	Val	CAC
                   c      ACCA tacaagcaca
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A          C T
                    T     T G A C C     A
        G A        A      | | | | |     G
      C     C T C G       A C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     GGGTC
                    T - A
                    T - A
                    G - C
                    C - G
                    T + G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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