The detailed information of tRNA gene sequence


Sequence ID>SRA1001783
Genome IDSRR001308.52024
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 61
End posion on genome 146
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cgggttccgt
tRNA gene sequence 
GGAGAGGTGGCCGAGTGGTTAATGGCAGCAGACTGTAAATCTGCCCTCTAACGAGTACGC
TGGTTCGAATCCAGCCCTCTCCACCA
Downstream region at tRNA end position 
aggttcacgg
Secondary structure (Cloverleaf model)
>SRA1001783	Tyr	GTA
                   t      ACCA aggttcacgg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G A C C     A
      T G A        G      | | | | |     G
    G       G C C G       G C T G G     C
    G       + | | |                 T T
    T       T G G C
      T A A        A     CCTCTAACGAGTAC
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    G T A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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