The detailed information of tRNA gene sequence


Sequence ID>SRA1001873
Genome IDSRR001308.104077
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 256
End posion on genome 166
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
nnnnnntcct
tRNA gene sequence 
GGAGAGATGGCAGAGCTGGTCGATTGCGCCTGATTCGAAATCAGGTGTATCCGCAAGGGT
ACCGGGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
agcgctctta
Secondary structure (Cloverleaf model)
>SRA1001873	Ser	CGA
                   t      GCCA agcgctctta
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
    T C G A        G      | + | | |     G
  G         G A C G       G G G G G     C
  G         + | | |                 T T
  T         T T G C
    C G A          G     TGTATCCGCAAGGGTACC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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