The detailed information of tRNA gene sequence


Sequence ID>SRA1001956
Genome IDSRR001308.148348
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 13
End posion on genome 105
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aggcatcaac
tRNA gene sequence 
GGAGAGGTGGCCGAGTGGCTGAAGGCGATGGTTTGCTAAACCGTTATACGGTCAAAAGCC
GTATCGGGGGTTCGAATCCCCCCCTCTCCGCCA
Downstream region at tRNA end position 
gatcttctta
Secondary structure (Cloverleaf model)
>SRA1001956	Ser	GCT
                   c      GCCA gatcttctta
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G G G G G     C
    G         | | |                 T T
    C       A G G C
      T G A        G     TATACGGTCAAAAGCCGTATC
                    A - T
                    T + G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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