The detailed information of tRNA gene sequence


Sequence ID>SRA1001961
Genome IDSRR001308.149384
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 177
End posion on genome 261
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
gttcacctta
tRNA gene sequence 
GGAGAGGTGGCCGAGTGGTTAATGGCAGCAGACTGTAAATCTGCCCTCTTACGAGTACGC
TGGTTCGAATCCAGCCCTCTCCACCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001961	Tyr	GTA
                   a      ACCn nnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G A C C     A
      T G A        G      | | | | |     G
    G       G C C G       G C T G G     C
    G       + | | |                 T T
    T       T G G C
      T A A        A     CCTCTTACGAGTAC
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    G T A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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