The detailed information of tRNA gene sequence


Sequence ID>SRA1001974
Genome IDSRR001308.157979
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 85
End posion on genome 172
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ccaatcctac
tRNA gene sequence 
AGAGAGGTGCCCGAGTGGTTGAAGGGGCACGCCTGGAAAGCGTGTATGCGGGTAACCGTA
TCGAGGGTTCGAATCCCTTCCTCTCTGCtt
Downstream region at tRNA end position 
aaaagtctca
Secondary structure (Cloverleaf model)
>SRA1001974	Ser	GGA
                   c      GCtt aaaagtctca
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        G      + | | | |     G
    G       G C C C       G A G G G     C
    G         | | |                 T T
    T       A G G G
      T G A        G     TATGCGGGTAACCGTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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